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TCA cycle VI (Helicobacter)

State Icon Reaction EC-Number Confidence maximal confidence score from EnzymeDetector
succinyl-CoA + acetoacetate <=> succinate + acetoacetyl-CoA 2.8.3.18 succinyl-CoA:acetate CoA-transferase
2.8.3.5 3-oxoacid CoA-transferase


(S)-malate + menaquinone <=> oxaloacetate + menaquinol 1.1.5.4 malate dehydrogenase (quinone)

cis-aconitate + H2O <=> isocitrate 4.2.1.3 aconitate hydratase

isocitrate + NADP+ <=> 2-oxoglutarate + CO2 + NADPH 1.1.1.286 isocitrate---homoisocitrate dehydrogenase
1.1.1.41 isocitrate dehydrogenase (NAD+)
1.1.1.42 isocitrate dehydrogenase (NADP+)



(S)-malate <=> fumarate + H2O 4.2.1.2 fumarate hydratase
4.2.1.34 (S)-2-methylmalate dehydratase


menaquinol + fumarate <=> menaquinone + succinate 1.3.5.1 succinate dehydrogenase
1.3.5.4 fumarate reductase (quinol)


citrate <=> cis-aconitate + H2O 4.2.1.117 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming)
4.2.1.3 aconitate hydratase


acetyl-CoA + H2O + oxaloacetate <=> citrate + CoA + H+ 2.3.3.1 citrate (Si)-synthase
2.3.3.14 homocitrate synthase
2.3.3.16 citrate synthase (unknown stereospecificity)
2.3.3.3 citrate (Re)-synthase




2-oxoglutarate + CoA + oxidized_ferredoxin <=> succinyl-CoA + CO2 + reduced_ferredoxin_[iron-sulfur]_cluster + H+ 1.2.7.11 2-oxoacid oxidoreductase (ferredoxin)
1.2.7.3 2-oxoglutarate synthase


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