SOLVER glpk OBJ MAX Biomass_MW001_Glc # ============= Biomass function ============= # LB Biomass_NGAM 1.34 UB Biomass_NGAM 1.34 LB Biomass_MW001_Glc 0.0 UB Biomass_MW001_Glc 1000.0 # ============= Strain restrictions MW001 ============= # LB nuc_pyrim_de-novo_2.4.2.10_OROPRIBTRANS-RXN 0 UB nuc_pyrim_de-novo_2.4.2.10_OROPRIBTRANS-RXN 0 LB nuc_pyrim_de-novo_4.1.1.23_OROTPDECARB-RXN 0 UB nuc_pyrim_de-novo_4.1.1.23_OROTPDECARB-RXN 0 #LB T_ex_uracil -0 # uncomment for WT # ============= (poly)saccharides ============= # LB T_ex_beta-D-glucose -1.448 # C6 -1.448 LB T_ex_beta-maltose -0 # C12 LB T_ex_dextrin -0 # C6 LB T_ex_maltotriose -0 # C18 LB T_ex_starch -0 # C6 LB T_ex_sucrose -0 # C12 LB T_ex_pullulan -0 # C6 LB T_ex_glycerol -0 # C3 LB T_ex_(S)-malate -0 # C4~ LB T_ex_succinate -0 # C4~ LB T_ex_fumarate -0 # C4~ LB T_ex_D-gluconate -0 # C6 LB T_ex_glycogen -0 # C6 LB T_ex_alpha-D-xylose -0 # C5 LB T_ex_L-arabinose -0 # C5 LB T_ex_D-ribose -0 # C5 LB T_ex_beta-D-galactose -0 # C6 LB T_ex_glycolaldehyde -0 # C2~ LB T_ex_D-sorbitol -0 # C6 # ============= amino acids ============= # LB T_ex_L-alanine -0 # C3 -3.19 LB T_ex_L-arginine -0 # C6 LB T_ex_L-asparagine -0 # C4 LB T_ex_L-aspartate -0 # C4 -4.60 LB T_ex_L-glutamate -0 # C5 -1.86 LB T_ex_glycine -0 # C2 LB T_ex_L-pyroglutamate -0 # C5 -1.13 LB T_ex_L-glutamine -0 # C5 LB T_ex_L-cysteine -0 # C3 LB T_ex_L-isoleucine -0 # C6 LB T_ex_L-leucine -0 # C6 LB T_ex_L-methionine -0 # C5 LB T_ex_L-phenylalanine -0 # C9 LB T_ex_L-proline -0 # C5 LB T_ex_L-serine -0 # C3 LB T_ex_L-threonine -0 # C4 LB T_ex_L-tyrosine -0 # C4 LB T_ex_L-valine -0 # C5 -0.53 LB T_ex_L-lysine -0 # C6 LB T_ex_L-histidine -0 # C6 #LB T_sink_L-alanine 0.2 #LB T_sink_glycine 0.1 #LB T_sink_L-valine 0.1 # ============= cofactors and nutrients ============= # LB T_ex_urea -0 #LB T_ex-sulfate -0 #LB T_ex_hydrogen-sulfide -0 #LB T_ex-cobalt -0 #LB T_ex-copper -0 LB T_ex_coenzyme-B12 -0 #LB T_ex_ammonia -0 #LB T_ex_oxygen -0